Reproducible computation and high-performance computing

• drake an R-focused pipeline toolkit for data analysis projects. Featured in the rOpenSci blog and R Podcast Episode 22.
• txtq A small message queue for parallel processes.
• proffer A pprof-based profiler for R code.
• downsize Ease the transition between testing and deploying data analysis workflows.

Dissertation research

• fbseq Fully-Bayesian GPU-accelerated analysis of RNA-seq data (arXiv preprint).
• fbseqCUDA CUDA GPU support for fbseq.
• fbseqOpenMP OpenMP support for fbseq.

Support for remake

• remakeGenerator Generate large remake-style workflows.
• parallelRemake Parallel computing support for remake.